How to notate a grace note at the start of a bar with lilypond? [7] edgeR_3.16.5 limma_3.30.12 I thought that working in a new environment would help, but it didnt. Does anyone know why I'm getting the following message when I load tidyverse in a new session. Documentation Please read the posting So, I recommend following the install instructions for the respective versions of QIIME 2, and then install the plugin. To add to this, I have also been using DESeq2 recently and ran into the same problem. Im trying to use this code: install.packages("locfit"), but this warning appeared: package locfit is not available for this version of R If not fixed, Try removing remove.packages (rlang) then. but when I go to load the libraries I get this error: Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : I tried to get a whole new environment and install an old version of Qiime but I still got a ton of conflicts and it didnt install. [R] Error: package or namespace load failed for 'ggplot2' in Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? Sign in Start R to confirm they are gone. You signed in with another tab or window. Surly Straggler vs. other types of steel frames. Have a question about this project? Sounds like you might have an issue with which R Rstudio is running. Browse other questions tagged, Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site. or install using BiocManager that will also install CRAN packages BiocManager::install('locfit'), I couldn't intall locfit but somehow, i did so many different things and it worked. Installation path not writeable, unable to update packages: boot, class, KernSmooth, lattice, MASS, Matrix, mgcv, nlme, Use of this site constitutes acceptance of our User Agreement and Privacy I ran this code: Collecting package metadata (current_repodata.json): doneSolving environment: failed with initial frozen solve. [4] BiocParallel1.20.1 matrixStats0.56.0 Biobase2.46.0 My code is GPL licensed, can I issue a license to have my code be distributed in a specific MIT licensed project? [4] colorspace_1.3-2 htmltools_0.3.5 base64enc_0.1-3 Press CTRL-C to abort.failedUnsatisfiableError: The following specifications were foundto be incompatible with the existing python installation in your environment:Specifications: It also hung on the solving environment for over an hour. Warning message: Resolving package or namespace loading error library(caret) namespace load failed Object sigma not From the console install.packages ("rlang") should fix this. First the biocLite (the installer of all the related packages, on the previous installation of the DESeq2 package everything was smooth but it was on Linux), Then trying to install the DESeq2 package with biocLite (looks like everything is good). Is there anything I can do to speed it up? Running install.packages("Hmisc") gives the first part of the error with missing cluster.so library. - the incident has nothing to do with me; can I use this this way? Thnaks anyway, Can't Load R DESeq2 Library, Installed All Missing Packages and Still Have Problems, How Intuit democratizes AI development across teams through reusability. install.packages ("backport") You will be offered a choice to install v 1.1,10 from source. Platform: x86_64-apple-darwin15.6.0 (64-bit) The error states that the current version is 0.4.5 but 0.4.10 is required. More info about Internet Explorer and Microsoft Edge. What do I need to do to reproduce your problem? It could also be caused by a bad antivirus program that locks the dll which prevents it from being updated. Whats the grammar of "For those whose stories they are"? It only takes a minute to sign up. To learn more, see our tips on writing great answers. You are doing something very wrong when installing your packages. DESeq2 installation in R - Bioconductor :), BiocManager::install("locift") [57] gtable0.3.0 codetools0.2-16 multtest2.42.0 abind1.4-5 To learn more, see our tips on writing great answers. R version 3.6.1 (2019-07-05) Sorry, I'm newbie. Installing package(s) 'XML' March 1, 2023, 3:25pm Please try the following steps: Quit all R/Rstudio sessions. [26] xtable1.8-4 scales1.1.1 backports1.1.9 checkmate2.0.0 BiocManager1.30.10 Warning message: Please try reinstalling rlang on a fresh session. Replacing broken pins/legs on a DIP IC package. Error: package or namespace load failed, object not found By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Bioconductor - DESeq2 Just to add on -- do you require an old version of Bioconductor for your current project? This sort of problems almost always comes from a bug in R on Windows: If you reinstall a package that includes compiled code, and if that package is already loaded in R, the DLL will not get updated. Hmm, but it says package XML successfully unpacked and MD5 sums checked it looks mostly like these have been successful? By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. If it fails, required operating system facilities are missing. When I try installing GenomeInfoDbData and GenomeInfoDb using conda, it says that the packages were already installed. In install.packages() : [16] phyloseq1.30.0, loaded via a namespace (and not attached): ): RRlib ( R ) libiconv.so LD_LIBRARY_PATH R Sys.getenv("LD_LIBRARY_PATH") R RR When an R package depends on a newer package version, the required package is downloaded but not loaded. [22] scales_0.4.1 backports_1.0.5 checkmate_1.8.2 This includes any installed libraries. 1 RR. R https://www.jianshu.com/p/d9ca5a66cb72?v=1676346790161 2 ``` library (tidyverse) Error: package or namespace load failed for 'tidyverse' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): 'cli' 3.3.0>= 3.4.1 In addition: Warning message: How to use Slater Type Orbitals as a basis functions in matrix method correctly? RcppArmadillo 0.9.880.1.0 0.9.900.1.0 TRUE I tried to download the "locfit" package but I can't find it anywhere. Also note, however, that the error you got has been associated in the past with mirror outages. /var/folders/0t/8jm6lgqs0qj63rprpf9q_nfw0000gn/T//RtmpMNoZz3/downloaded_packages enter citation("DESeq2")): To install this package, start R (version Any suggestions would be greatly appreciated. Thanks! ERROR: dependency Hmisc is not available for package DESeq2 downloaded 228 KB, package htmlTable successfully unpacked and MD5 sums checked I tried running conda install -c bioconda bioconductor-deseq2 in a conda environment, but when I run R console and try to import DESeq2 I am getting the error message: Error: package or namespace load failed for GenomeInfoDb in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): to your account. Now loading the DESeq2 library (Errors): Because I already installed >10 packages by hand I assume the solution is not to keep installing the missing packages because those packages will have more missing packages and more and more and I won't get out of this loop. Post questions about Bioconductor It seems that lots of packages, most importantly data.table and lme4, were not properly compiled. Error: package or namespace load failed for 'olsrr' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'zip' mara May 25, 2021, 12:49pm #2 It looks like you need a package that it depends on. binary source needs_compilation Id also remove and re-install the version of QIIME 2 you tried to force install an older version of python, as you can tell, many things just broke. Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): 'KEGGREST' 2301_76497647 17 1 109+ 20+ 30 10 1 0 2 0 I've copied the output below in case it helps with troubleshooting. Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'XML' so I would try to use BiocManager::install ("XML"). [1] SummarizedExperiment1.16.1 DelayedArray0.12.3 BiocParallel1.20.1 matrixStats0.56.0 What is a word for the arcane equivalent of a monastery? Installing package(s) 'GenomeInfoDbData' [31] Hmisc4.4-1 XVector0.26.0 gridExtra2.3 ggplot23.3.2 png0.1-7 One solution is to find all available packages. - the incident has nothing to do with me; can I use this this way? Error: package or namespace load failed for 'DESeq2 - Bioconductor Have you tried install.packages("locfit") ? How do I align things in the following tabular environment? How do you get out of a corner when plotting yourself into a corner, Identify those arcade games from a 1983 Brazilian music video. LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib, locale: trying URL 'https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/XML_3.99-0.3.zip' I do know that it works well in qiime2-2020.6. [3] GenomicRanges_1.26.3 GenomeInfoDb_1.10.3 By clicking Sign up for GitHub, you agree to our terms of service and Assuming that your conda environment name is renv, try running this in the terminal: This should open up the Rstudio interface, like normal, but using everything defined in your renv environment. Did you do that? This is the same answer I wrote in a comment to Hack-R I just wanted to post a separate answer: What I did was - uninstalled everything (RTools then RStudio thenR and also I deleted the R directory because it still had all the previous libraries) I did this in order to eliminate any chance that something was corrupt. Your best bet would be to download the package source code and change the R version and install manually if you wanted the most recent version of locfit to install on your computer. Install DESeq2 through anaconda - Bioinformatics Stack Exchange Then I reinstalled R then Rstudio then RTools. May I know is there any other approach I can try? Citation (from within R, enter citation ("DESeq2") ): Installation To install this package, start R (version "4.2") and enter: if (!require ("BiocManager", quietly = TRUE)) install.packages ("BiocManager") BiocManager::install ("DESeq2") For older versions of R, please refer to the appropriate Bioconductor release . Running under: macOS Sierra 10.12.3, locale: Well occasionally send you account related emails. Error: package or namespace load failed for 'GenomeInfoDb' in loadNamespace (i, c (lib.loc, .libPaths ()), versionCheck = vI [ [i]]): there is no package called 'GenomeInfoDbData' Error: package 'GenomeInfoDb' could not be loaded When I try installing GenomeInfoDbData and GenomeInfoDb using conda, it says that the packages were already installed. Is it suspicious or odd to stand by the gate of a GA airport watching the planes? Old packages: 'RcppArmadillo', 'survival' [1] RCurl1.98-1.1 SummarizedExperiment1.16.1 DelayedArray0.12.2 If you preorder a special airline meal (e.g. 2. Are you sure the R you're running from the command line is installed through Anaconda as well? "4.2") and enter: For older versions of R, please refer to the appropriate R DESeq2 - Retrying with flexible solve.Solving environment: Found conflicts! To resolve this error, install the required package as a cluster-installed library. BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib I would like to install DESeq2 for DE analysis. error: object 'rlang_dots_list' not found That plugin is has not been updated to work with later releases of QIIME 2. Error: package or namespace load failed for ' tidyverse' in dyn.load (file, DLLpath = DLLpath, . . Ultimately my colleague helped me to solve the issue by following the steps: Then launching rstudio from within the environment. I have tried your suggestion and also updating the packages that command indicates. Is there a single-word adjective for "having exceptionally strong moral principles"? downloaded 4.1 MB, package XML successfully unpacked and MD5 sums checked, The downloaded binary packages are in [5] BiocManager1.30.10 GenomeInfoDbData1.2.2 cellranger1.1.0 pillar1.4.3 What I did was - uninstalled everything (R, Rstudio, RTools and deleted the R directory) to eliminate any chance that something was corrupt. Expected in: /usr/lib/libSystem.B.dylib, /Library/Frameworks/R.framework/Resources/bin/INSTALL: line 34: 9542 Done echo 'tools:::.install_packages()' there is no package called GenomeInfoDbData I installed the package successfully with conda, but Rstudio is apparently does not know about it. Finally After 3-4 manual installations of missing packages everything worked. Policy. .onLoad failed in loadNamespace() for 'rlang', details: there is no package called Hmisc. Is a PhD visitor considered as a visiting scholar? @artembus Sounds like it was a ton of work! Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05) Error: package GenomeInfoDb could not be loaded. The nature of simulating nature: A Q&A with IBM Quantum researcher Dr. Jamie We've added a "Necessary cookies only" option to the cookie consent popup. If not, I recommend using the latest version of R and Bioconductor for bug fixes and improvements. I can download DESeq2 using, User Agreement and Privacy I downloaded the R-4.0.1.pkg link from https://cran.r-project.org/bin/macosx/ and installed it as an administrator. data . [1] enUS.UTF-8/enUS.UTF-8/enUS.UTF-8/C/enUS.UTF-8/en_US.UTF-8, attached base packages: Let me confer with the team. now when I tried installing the missing packages they did install. + ), update = TRUE, ask = FALSE) Remember to always click on the red Show me the content on this page notice when navigating these older versions. [10] RColorBrewer_1.1-2 plyr_1.8.4 stringr_1.2.0 DESeq2: Error: package or namespace load failed for 'DESeq2': objects This is default text for notification bar, Removing Unwanted Variation Using Pseudoreplicates and Pseudosamples, Identifying Differentially Abundant Phosphoproteome Sites With ProteomeRiver, Extension of scPipe Bioconductor Package for scATAC-seq Data, Matilda for Single-cell Multi-omics Data Integration, cellXY for Exploring Gender-specific Genes in Single Cell RNA-seq Data, Stereopy as an Advanced Tool for Interpreting Spatial Transcriptomics Data, Spectre Toolkit for Rapid Analysis of Cytometry Data, A Bioconductor Framework for High-dimensional in situ Cytometry Analysis, Error when installing Aldex2 Community Plugin Support, How the Gut Microbiota Affects COVID-19 Vaccine Immunogenicity , Clinical Application of 24 G Cannula Needle and 3-0 Polypropylene Suture in Vas Deferens Exploration. Connect and share knowledge within a single location that is structured and easy to search. As mentioned above, my institutional IT can replicate this on a laptop with a completely fresh R install and no prior package installations (meaning isn't to do with installing with another version of the package already running). After 3-4 manual installs everything worked. Installing packages directly into that location fixes the issue but is not desirable for all the reasons that people might want to use custom locations (e.g. Installing DESeq2 Error: no package called 'GenomeInfoDbData - GitHub March 1, 2023, 7:31pm installing the source package GenomeInfoDbData, dyld: lazy symbol binding failed: Symbol not found: _utimensat Erasmus+ funds available! sessionInfo() Running under: macOS Sierra 10.12.6. Policy. What am I doing wrong here in the PlotLegends specification? Platform: x86_64-w64-mingw32/x64 (64-bit) Can you provide a screen shot of the errors when you try to setup a new conda environment for QIIME 2? Hello, Error: package or namespace load failed for DESeq2, R version 3.3.2 (2016-10-31) I have been working on installing Aldex2 (@dgiguer) in my Qiime environment using Ubuntu. What can a lawyer do if the client wants him to be acquitted of everything despite serious evidence? If I run install.packages(GenomeInfoDb) from R console, it is telling me that the package is not available for R version 3.5.1. * removing /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/DESeq2. Running under: Windows 10 x64 (build 18362), locale: Error: package GenomeInfoDb could not be loaded, if (!requireNamespace("BiocManager", quietly = TRUE)), BiocManager::install("GenomeInfoDbData") [a/s/n]: R version 4.0.1 (2020-06-06) Why is there a voltage on my HDMI and coaxial cables? Platform: x86_64-apple-darwin13.4.0 (64-bit) I was assuming that to be the case. DESeq2 - I can't get the library to load - Bioconductor Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? [21] openxlsx4.1.4 rio0.5.16 tibble2.1.3 mgcv1.8-31 there is no package called Hmisc. Give up and run everything from the "permitted" library location (e.g. ()library(DESeq2):Error in loadNamespace: no package called ""s (Factorization). and then updating the packages that command indicates. Connect and share knowledge within a single location that is structured and easy to search. Just updated my previous R to 4.01 and now I cant load DESeq2. Making statements based on opinion; back them up with references or personal experience. Policy. failed UnsatisfiableError: The following specifications were found to be incompatible with the existing python installation in your environment: Specifications: q2-aldex2 -> python=3.6 Your python: python=3.8.15 [9] lattice0.20-40 glue1.3.2 digest0.6.25 XVector0.26.0 Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. [1] BiocInstaller_1.24.0 SummarizedExperiment_1.4.0 Press CTRL-C to abort. If you didn't install Rstudio through conda, Rstudio may be using its own version of R that is bundled with Rstudio, instead of the one you've installed via conda. Surly Straggler vs. other types of steel frames. [1] parallel stats4 stats graphics grDevices utils datasets methods base, other attached packages: Installation path not writeable, unable to update packages: boot, class, KernSmooth, lattice, MASS, Matrix, mgcv, nlme, installation of package GenomeInfoDbData had non-zero exit status. [69] tidyselect_1.0.0. I want to import DESeq2 in Rstudio though and it is giving me a different error when I try importing DESeq2: Error in library("DESeq2") : there is no package called DESeq2. The issue here was likely that you used two different package managers (conda and R), each setting and managing their own paths. [1] locfit_1.5-9.1 splines_3.3.2 lattice_0.20-34 Disconnect between goals and daily tasksIs it me, or the industry? And finally, install the problem packages, perhaps also DESeq2. Installation instructions to use this It is working now. [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8, attached base packages: If you dont post the error in question (why you cant install Hmisc) no one can help answer your question. ), update = TRUE, ask = FALSE), more details: BiocManager::valid()$toonew, BiocManager::valid()$outof_date, Warning message: It fails with the VORO++ library, It seems it is related to the -Xcompiler flag. I need help installing a package "DESeq2" having - RStudio Community The other option is to download and older version of locfit from the package archive and install manually. Does ZnSO4 + H2 at high pressure reverses to Zn + H2SO4? [40] assertthat_0.1 rpart_4.1-10 nnet_7.3-12, It should not be necessary (R should take care of loading dependencies) but try installating data.table also. Error in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]) : there is no package called 'data.table' Error: package or namespace load failed for 'DESeq2' Tried installing the missing package: Running. https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6: https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/PACKAGES', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/htmlTable_2.0.1.zip', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/xfun_0.16.zip', https://wbc.upm.edu.my/cran/bin/windows/contrib/3.6/XML_3.99-0.3.zip', User Agreement and Privacy 9. As such there are two solutions that may be more or less attainable given your own IT system. + "htmlTable", "xfun" Raise a support ticket every time you need to install a package into a custom location and hope that IT eventually gives in. [41] magrittr1.5 RCurl1.98-1.2 tibble3.0.3 Formula1.2-3 cluster2.1.0 in your system, start R and enter: Follow package xfun successfully unpacked and MD5 sums checked Acidity of alcohols and basicity of amines. However, I am increasingly thinking it's something to do with how my IT has set permissions that are causing things to quietly fail. Why are Suriname, Belize, and Guinea-Bissau classified as "Small Island Developing States"? Learn more about Stack Overflow the company, and our products. Thanks for contributing an answer to Stack Overflow! March 1, 2023, 4:56pm I am also encountering a set of similar (although possible totally unrelated) issue with other packages, RStudio provides the following warning every startup, library(devtools) gives the following errors, Someone on twitter asked for the results of packageDescription("rlang"). I'd take a look at need, to see if there are any insights to be had, so that you can correct the root problem rather than having to do this procedure with other packages. [34] lazyeval_0.2.0 RCurl_1.95-4.8 tibble_1.2 But I guess you have many problems with your installation, and I'd suggest BiocManager::valid () * removing /Users/nikitavlasenko/miniconda3/envs/renv/lib/R/library/Hmisc Why do many companies reject expired SSL certificates as bugs in bug bounties? I then launched the R application (from the finder, not RStudio) and installed BiocManager. Use MathJax to format equations. Solution To resolve this error, install the required package as a cluster-installed library. LAMMPS KOKKOS for NVIDIA GPUs using CUDA - LAMMPS Installation - Open Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib (which was built for Mac OS X 10.13) [28] digest_0.6.12 stringi_1.1.2 grid_3.3.2 to one of the following locations: https://code.bioconductor.org/browse/DESeq2/, https://bioconductor.org/packages/DESeq2/, git clone https://git.bioconductor.org/packages/DESeq2, git clone git@git.bioconductor.org:packages/DESeq2. [13] zlibbioc_1.20.0 munsell_0.4.3 gtable_0.2.0 Connect and share knowledge within a single location that is structured and easy to search. Content type 'application/zip' length 233860 bytes (228 KB) Loading required package: GenomeInfoDb I was able to get over this by using g++ for the VORO++ library but I am unsure how this affects the result. [36] digest0.6.25 stringi1.4.6 grid3.6.1 tools3.6.1 bitops1.0-6 I do not get why Rstudio does not see that I alrerady installed DESeq2 with conda. Sorry if I missed this, the question was quite long so I kind of skimmed, but I noticed that early on some of the packages were reported as requiring manual compilation from source. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Bioconductor release. I again tried the installation with biocLite but was met with errors of missing packages (or the installation was ok and the when I tried loading the DESeq2 library I was met with missing packages errors) so I changed the CRAN mirror in RStudio. im using ubuntu, R ver 4.0.4, bioconductor ver 1.12. I'm having a similar error, but different package: library("DESeq2") Any other suggestion? [1] parallel stats4 stats graphics grDevices utils datasets methods base, other attached packages: I even tried BiocManager::install("XML") but all failed as shown below. Why are physically impossible and logically impossible concepts considered separate in terms of probability? Maybe it is not a kind of quick fix and it could have been solved easier, but I was not able to. "htmlTable", "xfun" Is there anyone the same as mine error while loading library(DESeq2)? Error: package or namespace load failed for 'DESeq2' in loadNamespace (j <- i [ [1L]], c (lib.loc, .libPaths ()), versionCheck = vI [ [j]]): there is no package called 'locfit' 0 cbravo11 0 @e0025e70 Last seen 10 months ago United States I installed DESeq2 using this code: Author: Michael Love [aut, cre], Constantin Ahlmann-Eltze [ctb], Kwame Forbes [ctb], Simon Anders [aut, ctb], Wolfgang Huber [aut, ctb], RADIANT EU FP7 [fnd], NIH NHGRI [fnd], CZI [fnd], Maintainer: Michael Love . [65] ape5.3 stringi1.4.6 Rcpp1.0.4 vctrs0.2.4 To view documentation for the version of this package installed Error: package or namespace load failed for 'DESeq2': objects 'rowSums', 'colSums', 'rowMeans', 'colMeans' are not exported by 'namespace:S4Vectors' I am using R 3.6.1 and Rstudio 1.2. technocrat August 27, 2020, 10:15pm #2 RedRabbit: DESeq2 requires R 4 and running more than a couple of releases behind in R risks multiplying problems. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, You can try installing packages in R (which comes with R 3.5.1, not RStudio). [29] crayon1.3.4 readxl1.3.1 nlme3.1-145 MASS7.3-51.5 [41] Rhdf5lib1.8.0 munsell0.5.0 cluster2.1.0 zip2.0.4 Glad everything is finally working now. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. [53] rstudioapi0.11 igraph1.2.5 bitops1.0-6 labeling0.3 Can't Load R DESeq2 Library, Installed All Missing Packages and Still Not the answer you're looking for? By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. I tried installing DESeq2 using: but it run into a lot of errors (some missing packages for some dependency packages etc) Then I tried installing all the missing packages manually by downloading from CREN and installing the missing packages from .zip files. CRAN: https://mirrors.sjtug.sjtu.edu.cn/cran/, Bioconductor version 3.12 (BiocManager 1.30.17), R 4.0.3 (2020-10-10), Old packages: 'cli', 'dplyr', 'igraph', 'MASS', 'ps', 'RSQLite', 'testthat', 'tibble', package locift is not available for Bioconductor version '3.12', A version of this package for your version of R might be available elsewhere,see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages.